A biopsy is a procedure done to remove tissue or cells from the body for examination under a microscope. Some biopsies can be done in a doctor's office while others need to be done in a hospital setting. In addition, some biopsies can be done with a local anesthetic to numb the area while others may require sedation or even full anesthesia. 

Biopsies are usually done to determine whether a tumor is malignant (cancerous) or to determine the cause of an unexplained lesion, mole, infection, or inflammation.

A biopsy can be obtained in various ways, depending on the type of specimen needed. Tissue samples are usually small and taken from tissue that appears changed in structure, such as a tumor.


Types of biopies include, but are not limited to:

Endoscopic biopsy

This type of biopsy is done through a fiberoptic endoscope (a long, thin tube that has a close-focusing telescope on the end for viewing) through a natural body orifice (for example, rectum or mouth) or a small incision (for example, arthroscopy). The endoscope is used to look at the organ in question for abnormal or suspicious areas in order to take out a small amount of tissue for study. Endoscopic procedures are named for the organ or body area to be visualized and/or treated. The doctor can insert the endoscope into the gastrointestinal tract (alimentary tract endoscopy), bladder (cystoscopy), abdominal cavity (laparoscopy), joint cavity (arthroscopy), mid-portion of the chest (mediastinoscopy), or trachea and bronchial system (laryngoscopy and bronchoscopy).

Bone marrow biopsy

Bone marrow aspiration and/or biopsy is a procedure that involves taking a small amount of bone marrow fluid (aspiration) and/or solid bone marrow tissue (called a core biopsy), usually from the back of the hip bones, to be examined for the number, size, and maturity of blood cells and/or abnormal cells.

Excisional or incisional biopsy

This type of biopsy is often used when a wider or deeper portion of the tissue is needed. Using a scalpel (surgical knife), a full thickness of skin or all or part of a large tumor may be removed for further examination, and the wound is sutured closed (with surgical thread).

When the entire tumor is removed, it is called excisional biopsy. If only a portion of the tumor is removed, it is called incisional biopsy. For instance, excisional biopsy is the method usually preferred when melanoma is suspected. Both types of biopsies can be performed by using local or regional anesthesia. If the tumor is inside the chest or abdomen, general anesthesia is used. Under some circumstances, surgeons will take an excisional or incisional biopsy that goes immediately to the pathologist while the patient remains under anesthesia, ensuring complete excision of a tumor. 

Fine needle aspiration (FNA) biopsy

This type of biopsy involves using a thin needle and syringe to remove very small pieces from a tumor. Local anesthetic is sometimes used to numb the area, but the test rarely causes much discomfort and leaves no scar.

FNA is not used for diagnosis of a suspicious mole, but may be used to biopsy large lymph nodes near a melanoma to see if the melanoma has metastasized (spread). Breast and thyroid tumors are examples of tumors that may be studied through FNA. A computed tomography scan (CT or CAT scan) — an X-ray procedure that produces cross-sectional images of the body — may be used to guide a needle into a tumor in an internal organ, such as the lung or liver. An ultrasound or other study may also be used for guidance of the needle. 

Punch biopsy

Punch biopsies involve taking a deeper sample of skin with a biopsy instrument that removes a short cylinder, or "apple core," of tissue. After a local anesthetic, the instrument is rotated on the surface of the skin until it cuts through all the layers, including the dermis, epidermis, and the most superficial parts of the subcutis (fat).

Shave biopsy

This type of biopsy involves removing the top layers of skin by shaving it off. Shave biopsies are used to diagnose some basal cell or squamous cell skin cancers as well as other skin lesions, but they are not recommended for suspected melanomas of the skin. Shave biopsies are also performed with a local anesthetic.

Skin biopsy

Skin biopsies involve removing a sample of skin for examination under the microscope to determine if melanoma, basal cell, squamous cell, or other skin lesion is present. The biopsy is done under local anesthesia. The patient usually just feels a small needle stick and a little burning for about a minute, with a little pressure, but no pain.

Prostate biopsy

A prostate biopsy is the removal of small tissue samples from the prostate for examination. At Northwell Health, expert clinicians at the Arthur Smith Institute for Urology use cutting-edge magnetic resonance imaging (MRI) technology developed in collaboration with the National Cancer Institute. Instead of a standard biopsy that targets the general prostate, a fusion platform at Northwell Health allows imaging specialists to perform a MRI and take ultrasound images simultaneously. This allows the multidisciplinary team of clinicians to target specific areas of the prostate for analysis.

Preparing for a biopsy

To prepare for a biopsy, we suggest the following:

  • For one week prior to the procedure, patients should not take any medications which may promote bleeding: aspirin, nonsteroidal anti-inflammatory drugs such as Advil, Motrin, ibuprofen, Anaprox, Aleve, naprosyn, etc., vitamin E supplements or green tea. Patients may take Tylenol.
  • If a patient is currently taking anticoagulants (coumadin or heparin), he or she should contact the office where they will have the biopsy and the referring physician for special instructions.
  • Patients should notify the office where they will have the biopsy if they have previously taken prophylactic antibiotics for mitral valve prolapse.
  • Patients should contact the office where they will have the biopsy if there is any chance they could be pregnant.

Preparations for specific types of biopsies include:

  • CT-guided biopsy: Nothing to eat or drink four hours prior to test. Patients may take a small amount of water with their medications. Patients will need someone to take them home after the procedure. Prior to the biopsy, CT films must be forwarded to the CT department for the radiologist to review.
  • Sono-guided biopsy or aspiration: Patient should eat prior to arrival. Prior ultrasound reports must be forwarded to the ultrasound department for the radiologist to review prior to the biopsy. 

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